3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12948

Details:

PFam ID : PF12948

PFam Domain Description : MSP7-like protein C-terminal domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 33

Average sequence length: 115.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12948	Q8IDY3_PLAF7_473_616	68.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12948	C5HEC8_PLAFA_215_347	100

Sequence based PCA Plot of the family - PF12948 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay