3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12947

Details:

PFam ID : PF12947

PFam Domain Description : EGF domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 782

Average sequence length: 36.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12947	B3L6Q1_PLAKH_371_413	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12947	E4X5W9_OIKDI_259_307	100

Sequence based PCA Plot of the family - PF12947 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay