3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12946

Details:

PFam ID : PF12946

PFam Domain Description : MSP1 EGF domain 1

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 40

Average sequence length: 36.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12946	B3L6Q1_PLAKH_371_413	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12946	B3L6Q1_PLAKH_371_413	100

Sequence based PCA Plot of the family - PF12946 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay