3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12945

Details:

PFam ID : PF12945

PFam Domain Description : Flagellar protein YcgR

Number of Sequence in 50% Dataset : 131

Number of Sequence in Full Dataset : 242

Average sequence length: 87.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12945	B2JUY4_BURP8_100_176	46.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12945	B2JUY4_BURP8_100_176	97.0

Sequence based PCA Plot of the family - PF12945 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay