3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12942

Details:

PFam ID : PF12942

PFam Domain Description : Archaeal ammonia monooxygenase subunit A (AmoA)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 81

Average sequence length: 149.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12942	D1MB49_9ARCH_17_59	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12942	B5LBH6_9CREN_1_64	95

Sequence based PCA Plot of the family - PF12942 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay