3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12939

Details:

PFam ID : PF12939

PFam Domain Description : Domain of unknown function (DUF3837)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 11

Average sequence length: 93.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12939	A8PGY6_BRUMA_357_584	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12939	C4G920_9FIRM_1_105	100

Sequence based PCA Plot of the family - PF12939 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay