3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12937

Details:

PFam ID : PF12937

PFam Domain Description : F-box-like

Number of Sequence in 50% Dataset : 681

Number of Sequence in Full Dataset : 3536

Average sequence length: 48.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12937	Q4SVP2_TETNG_279_323	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12937	A5DDS8_PICGU_204_250	100

Sequence based PCA Plot of the family - PF12937 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=2 Length=14
Motif3 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay