3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12934

Details:

PFam ID : PF12934

PFam Domain Description : FTO C-terminal domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 20

Average sequence length: 129.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12934	B8BV54_THAPS_366_557	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12934	C1MZ05_MICPC_338_512	100

Sequence based PCA Plot of the family - PF12934 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay