3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12932

Details:

PFam ID : PF12932

PFam Domain Description : Vesicle coat trafficking protein Sec16 mid-region

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 127

Average sequence length: 112.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12932	D3BG35_POLPA_935_1001	94

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12932	A4R4Z3_MAGO7_974_1083	100

Sequence based PCA Plot of the family - PF12932 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=78 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay