3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12928

Details:

PFam ID : PF12928

PFam Domain Description : tRNA-splicing endonuclease subunit sen54 N-term

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 117

Average sequence length: 79.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12928	E5S6P4_TRISP_63_120	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12928	F0XRR3_9PEZI_118_246	100

Sequence based PCA Plot of the family - PF12928 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay