3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12922

Details:

PFam ID : PF12922

PFam Domain Description : non-SMC mitotic condensation complex subunit 1, N-term

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 120

Average sequence length: 161.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12922	E0VIH0_PEDHC_71_239	16.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12922	E0VIH0_PEDHC_71_239	100

Sequence based PCA Plot of the family - PF12922 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=146 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay