3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12921

Details:

PFam ID : PF12921

PFam Domain Description : Mitochondrial ATPase expression

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 45

Average sequence length: 124.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12921	B6K4W0_SCHJY_195_302	68

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12921	E9DVG9_METAQ_334_467	100

Sequence based PCA Plot of the family - PF12921 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay