3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12919

Details:

PFam ID : PF12919

PFam Domain Description : TcdA/TcdB catalytic glycosyltransferase domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 55

Average sequence length: 294.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12919	B1FNZ8_9BURK_158_235	74.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12919	B8KCQ7_VIBPA_188_502	100

Sequence based PCA Plot of the family - PF12919 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=238 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay