3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12917

Details:

PFam ID : PF12917

PFam Domain Description : HD containing hydrolase-like enzyme

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 64

Average sequence length: 194.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12917	D0R2X5_LACJF_1_66	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12917	E3E957_PAEPS_1_208	100

Sequence based PCA Plot of the family - PF12917 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay