3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12911

Details:

PFam ID : PF12911

PFam Domain Description : N-terminal TM domain of oligopeptide transport permease C

Number of Sequence in 50% Dataset : 261

Number of Sequence in Full Dataset : 3397

Average sequence length: 54.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12911	Q9ZI29_TREDE_16_74	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12911	C4XEL4_MYCFE_36_111	100

Sequence based PCA Plot of the family - PF12911 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay