3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12908

Details:

PFam ID : PF12908

PFam Domain Description : Yersinia protein of unknown function (DUF3831)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 27

Average sequence length: 35.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12908	B3LC79_PLAKH_35_71	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12908	D1TRD6_YERPE_20_39	100

Sequence based PCA Plot of the family - PF12908 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay