3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12907

Details:

PFam ID : PF12907

PFam Domain Description : Zinc-binding

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 94

Average sequence length: 36.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12907	B3LC79_PLAKH_35_71	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12907	E6QZ91_CRYGW_35_74	98.9

Sequence based PCA Plot of the family - PF12907 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay