3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12905

Details:

PFam ID : PF12905

PFam Domain Description : Endo-alpha-N-acetylgalactosaminidase

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 54

Average sequence length: 346.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12905	E0KKS6_STRVO_318_371	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12905	D7BLC3_ARCHD_299_763	100

Sequence based PCA Plot of the family - PF12905 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=59 Length=8
Motif2 Start=276 Length=8
Motif3 Start=102 Length=11
Motif4 Start=131 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay