3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12902

Details:

PFam ID : PF12902

PFam Domain Description : Ferritin-like domain

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 93

Average sequence length: 217.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12902	A7AZ31_RUMGN_7_106	98.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12902	D3NSX9_AZOS1_46_327	100

Sequence based PCA Plot of the family - PF12902 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=120 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay