3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12897

Details:

PFam ID : PF12897

PFam Domain Description : Alanine-glyoxylate amino-transferase

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 154

Average sequence length: 413.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12897	D3R2K4_CLOB3_6_425	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12897	D3R2K4_CLOB3_6_425	100

Sequence based PCA Plot of the family - PF12897 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=222 Length=11
Motif2 Start=55 Length=11
Motif3 Start=81 Length=17
Motif4 Start=3 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay