3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12896

Details:

PFam ID : PF12896

PFam Domain Description : Anaphase-promoting complex, cyclosome, subunit 4

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 108

Average sequence length: 191.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12896	E1Z761_9CHLO_193_400	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12896	A7SU03_NEMVE_230_436	100

Sequence based PCA Plot of the family - PF12896 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=236 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay