3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12895

Details:

PFam ID : PF12895

PFam Domain Description : Anaphase-promoting complex, cyclosome, subunit 3

Number of Sequence in 50% Dataset : 432

Number of Sequence in Full Dataset : 730

Average sequence length: 83.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12895	Q89CN0_BRAJA_265_319	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12895	A0BG79_PARTE_227_339	99.5

Sequence based PCA Plot of the family - PF12895 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=8 Length=8
Motif2 Start=73 Length=8
Motif3 Start=31 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay