3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12894

Details:

PFam ID : PF12894

PFam Domain Description : Anaphase-promoting complex subunit 4 WD40 domain

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 116

Average sequence length: 45.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12894	Q89CN0_BRAJA_265_319	45.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12894	APC4_SCHPO_13_63	97.3

Sequence based PCA Plot of the family - PF12894 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=43 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay