3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12892

Details:

PFam ID : PF12892

PFam Domain Description : T surface-antigen of pili

Number of Sequence in 50% Dataset : 206

Number of Sequence in Full Dataset : 547

Average sequence length: 83.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12892	C9RJF1_FIBSS_313_431	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12892	D1BU24_XYLCX_1267_1334	98.1

Sequence based PCA Plot of the family - PF12892 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay