3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12885

Details:

PFam ID : PF12885

PFam Domain Description : Transducer of regulated CREB activity middle domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 35

Average sequence length: 125.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12885	B3RR55_TRIAD_4_67	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12885	E0VAI9_PEDHC_150_250	100

Sequence based PCA Plot of the family - PF12885 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay