3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12884

Details:

PFam ID : PF12884

PFam Domain Description : Transducer of regulated CREB activity, N terminus

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 29

Average sequence length: 60.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12884	Q4SZS4_TETNG_3_39	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12884	E2B4Y0_9HYME_3_92	100

Sequence based PCA Plot of the family - PF12884 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay