3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12881

Details:

PFam ID : PF12881

PFam Domain Description : NUT protein N terminus

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 18

Average sequence length: 253.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12881	E8UY38_TERSS_57_194	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12881	FAM22_MOUSE_21_342	100

Sequence based PCA Plot of the family - PF12881 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=201 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay