3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12874

Details:

PFam ID : PF12874

PFam Domain Description : Zinc-finger of C2H2 type

Number of Sequence in 50% Dataset : 366

Number of Sequence in Full Dataset : 1360

Average sequence length: 24.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12874	E6J3W5_STRAP_41_120	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12874	D8UGP0_VOLCA_63_87	49

Sequence based PCA Plot of the family - PF12874 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay