3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12873

Details:

PFam ID : PF12873

PFam Domain Description : Domain of unknown function (DUF3825)

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 43

Average sequence length: 211.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12873	E6J3W5_STRAP_41_120	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12873	B0NNB8_BACSE_219_513	100

Sequence based PCA Plot of the family - PF12873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=48 Length=8
Motif4 Start=245 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay