3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12872

Details:

PFam ID : PF12872

PFam Domain Description : OST-HTH/LOTUS domain

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 620

Average sequence length: 70.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12872	B9MX17_POPTR_171_333	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12872	C5KGA9_9ALVE_225_295	95.7

Sequence based PCA Plot of the family - PF12872 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay