3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12868

Details:

PFam ID : PF12868

PFam Domain Description : Domain of unknwon function (DUF3824)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 48

Average sequence length: 107.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12868	C4JEK8_UNCRE_552_601	53.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12868	Q29G81_DROPS_214_305	100

Sequence based PCA Plot of the family - PF12868 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=62 Length=8
Motif3 Start=113 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay