3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12862

Details:

PFam ID : PF12862

PFam Domain Description : Anaphase-promoting complex subunit 5

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 185

Average sequence length: 86.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12862	Q0Q3S2_9RALS_1_50	12.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12862	Q5CSH7_CRYPV_23_107	100

Sequence based PCA Plot of the family - PF12862 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=62 Length=19
Motif3 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay