3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12861

Details:

PFam ID : PF12861

PFam Domain Description : Anaphase-promoting complex subunit 11 RING-H2 finger

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 88

Average sequence length: 77.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12861	B4ITK2_DROYA_67_141	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12861	Q5CSH7_CRYPV_23_107	100

Sequence based PCA Plot of the family - PF12861 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=25 Length=8
Motif3 Start=52 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay