3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12859

Details:

PFam ID : PF12859

PFam Domain Description : Anaphase-promoting complex subunit 1

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 103

Average sequence length: 103.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12859	E1ZHU0_9CHLO_62_145	67.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12859	E5A3B2_LEPMC_152_295	100

Sequence based PCA Plot of the family - PF12859 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay