3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12858

Details:

PFam ID : PF12858

PFam Domain Description : TRNA-intron endonuclease catalytic domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 47.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12858	F1NG29_CHICK_50_118	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12858	F1NG29_CHICK_50_118	100

Sequence based PCA Plot of the family - PF12858 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay