3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12857

Details:

PFam ID : PF12857

PFam Domain Description : TOBE-like domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 209

Average sequence length: 58.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12857	C4UAV7_YERAL_242_286	32.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12857	Q2RNU8_RHORT_291_349	91.3

Sequence based PCA Plot of the family - PF12857 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=56 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay