3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12855

Details:

PFam ID : PF12855

PFam Domain Description : Life-span regulatory factor

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 70

Average sequence length: 40.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12855	E6RA15_CRYGW_102_169	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12855	Q2UMP5_ASPOR_62_90	98.5

Sequence based PCA Plot of the family - PF12855 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay