3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12852 Details: PFam ID : PF12852 PFam Domain Description : Cupin Number of Sequence in 50% Dataset : 261 Number of Sequence in Full Dataset : 653 Average sequence length: 174.9 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF12852D2VG54_NAEGR_28_186No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF12852B5GNS1_STRCL_3_255100 Sequence based PCA Plot of the family - PF12852 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=10 Length=8Motif2 Start=41 Length=8Motif3 Start=238 Length=14Motif4 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF12852
PFam Domain Description : Cupin
Number of Sequence in 50% Dataset : 261
Number of Sequence in Full Dataset : 653
Average sequence length: 174.9
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER