3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12851

Details:

PFam ID : PF12851

PFam Domain Description : Oxygenase domain of the 2OGFeDO superfamily

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 120

Average sequence length: 333.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12851	D2VG54_NAEGR_28_186	83.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12851	D8PYG3_SCHCM_332_489	94.1

Sequence based PCA Plot of the family - PF12851 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay