3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12850

Details:

PFam ID : PF12850

PFam Domain Description : Calcineurin-like phosphoesterase superfamily domain

Number of Sequence in 50% Dataset : 1558

Number of Sequence in Full Dataset : 5244

Average sequence length: 211.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12850	E1X3Q0_BACMS_12_352	99.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12850	E3DSL0_BACA1_147_383	99.8

Sequence based PCA Plot of the family - PF12850 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=278 Length=8
Motif2 Start=43 Length=8
Motif3 Start=78 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay