3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12848

Details:

PFam ID : PF12848

PFam Domain Description : ABC transporter

Number of Sequence in 50% Dataset : 164

Number of Sequence in Full Dataset : 3357

Average sequence length: 85.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12848	C1HGZ5_9ESCH_223_286	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12848	F2MFV2_LACCA_181_300	99.4

Sequence based PCA Plot of the family - PF12848 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=8
Motif2 Start=11 Length=17
Motif3 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay