3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12847

Details:

PFam ID : PF12847

PFam Domain Description : Methyltransferase domain

Number of Sequence in 50% Dataset : 1149

Number of Sequence in Full Dataset : 3823

Average sequence length: 111.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12847	D9WST0_9ACTO_17_87	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12847	A8AES2_CITK8_5_174	99.8

Sequence based PCA Plot of the family - PF12847 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=100 Length=8
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay