3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12846

Details:

PFam ID : PF12846

PFam Domain Description : AAA-like domain

Number of Sequence in 50% Dataset : 835

Number of Sequence in Full Dataset : 2263

Average sequence length: 282.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12846	E7G7Y0_9FIRM_426_730	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12846	E6F0Q1_ENTFA_455_592	99.8

Sequence based PCA Plot of the family - PF12846 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=17
Motif2 Start=42 Length=8
Motif3 Start=341 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay