3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12844

Details:

PFam ID : PF12844

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 1253

Number of Sequence in Full Dataset : 4333

Average sequence length: 63.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12844	C2W846_BACCE_11_55	66.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12844	A5KPR9_9FIRM_25_87	99.9

Sequence based PCA Plot of the family - PF12844 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=50 Length=8
Motif2 Start=6 Length=18
Motif3 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay