3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12842

Details:

PFam ID : PF12842

PFam Domain Description : Domain of unknown function (DUF3819)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 129

Average sequence length: 140.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12842	Q4UEL1_THEAN_1489_1651	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12842	D2V2Z7_NAEGR_959_1108	100

Sequence based PCA Plot of the family - PF12842 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=74 Length=8
Motif4 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay