3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12840

Details:

PFam ID : PF12840

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 233

Number of Sequence in Full Dataset : 3740

Average sequence length: 60.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12840	E6N671_9ARCH_21_82	69.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12840	C8W615_DESAS_9_87	99.9

Sequence based PCA Plot of the family - PF12840 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=43 Length=8
Motif2 Start=1 Length=18
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay