3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12838

Details:

PFam ID : PF12838

PFam Domain Description : 4Fe-4S dicluster domain

Number of Sequence in 50% Dataset : 342

Number of Sequence in Full Dataset : 5648

Average sequence length: 56.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12838	A6Q6Q0_SULNB_46_122	99.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12838	A6Q6Q0_SULNB_46_122	99.9

Sequence based PCA Plot of the family - PF12838 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=63 Length=8
Motif3 Start=84 Length=8
Motif4 Start=49 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay