3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12837

Details:

PFam ID : PF12837

PFam Domain Description : 4Fe-4S dicluster domain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 242

Average sequence length: 24.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12837	E4LP23_9CLOT_216_239	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12837	D3PDX4_DEFDS_114_134	95.8

Sequence based PCA Plot of the family - PF12837 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay