3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12836

Details:

PFam ID : PF12836

PFam Domain Description : Helix-hairpin-helix motif

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 2178

Average sequence length: 63.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12836	B2A8P1_NATTJ_109_312	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12836	D6WF49_TRICA_585_650	100

Sequence based PCA Plot of the family - PF12836 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=46 Length=21
Motif2 Start=5 Length=8
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay