3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12835

Details:

PFam ID : PF12835

PFam Domain Description : Integrase

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 172

Average sequence length: 164.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12835	B2A8P1_NATTJ_109_312	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12835	B5N7G2_SALET_102_160	99.4

Sequence based PCA Plot of the family - PF12835 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=158 Length=8
Motif2 Start=43 Length=8
Motif3 Start=188 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay